FASTQ/A short-reads pre-processing tools

Hi all,

just a quick note to tell around about convenient tools aiming at pre-process fastq/a files before DNA mapping on a reference genome:
http://hannonlab.cshl.edu/fastx_toolkit/
https://github.com/najoshi/sickle
https://github.com/vsbuffalo/scythe

http://www.usadellab.org/cms/index.php?page=trimmomatic

Cheers,
Ludovic

Leave a Reply